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Argo: Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users
BioKin, Ltd.: Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.
Blue Tractor Software: Java based commercial software for DNA and Protein sequence analysis. Demo available.
Cognia: Provides tools research analysis in genomics, signal transduction and molecular biology.
DNA Sequencing Software: software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.
DoMix Scientific Software: Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading
eLABorate Packages: Programs designed as educational exercise for planning experiments in enzyme kinetics, protein-ligand binding, protein purification and related projects from the University of York, UK.
EnzymeX: Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.
FinchTV: Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux & Solaris. Uses QT library.
Insilico Biotechnology: Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.
JaMBW: Java based biologist's workbench by Luca I.G.Toldo.
Mekentosj software: Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.
Molecular Biology Software Links: Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.
Phenosystems: Offers the Gensearch software to locate and analyse potential mutation locations.
QualTrace DNA Sequencing Software: Analyzes the raw data contained within ABI trace files to identify nine major problems with either the sequencing reactions or the DNA sequencing instrument.
Rutgers Online Software Exchange: Offers free open source molecular biology software developed by scientists at Rutgers University, New Jersey.
SoftZymics: Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, NJ.

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